PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1000010317
Common NameOT_ostta10g03080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 413aa    MW: 46397.9 Da    PI: 7.1703
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1000010317genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065524221
                EETTTTEEESSHHHHHHHHH CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                +C+ Cg +F ++  L rH+r
  1000010317  5 SCSACGATFASRNALFRHLR 24
                7*****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.871434IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSEISCSACG ATFASRNALF RHLRADDASC GDVNDVASTS SASTQVEGAS RRASKRTTKE  60
GKGHDERRGP RAQRTDEDAL ERELWIGGLR GKFRSFKGFR DAIWRAMPRE GCEGIPVPQA  120
RVFKARGYKE KGEWVGYGFA ACRDPGEAKA LLVMHGTEIV DEDSGAIMVL KVLPATRRHA  180
GDKAKTPTKS RELKAGEHPN ERDIFMAWTS KTLERRALDR GITSEELVTD ALEREHAYVA  240
LRGVEVDRTA TERLRDELFD TKWPAQSQRR SVKSDNYIVL KRECSPSDPY ESLKLACEDL  300
MRAVDPSFPY DSLAITKNFI SSAHLDKEDQ SFQYAMAFGD FTGGGELCVE SSDGLTRYAI  360
DTRERLARFD GRCVHWVRGY EGERFSVVWY VNRRTNFTEP RFDVDLSFVA QD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003081750.10.0unnamed protein product
TrEMBLA0A090M9R70.0A0A090M9R7_
STRINGQ00ZK70.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP643233
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]